species:   Pimic
pid:       PID1824
parent:    Pmic_miR-1
paralog:   
locus:     scaffold_12:478925-479041
matures:   ['GUUGAGCCUGAUACAGUAGCCU', 'GCUACCGUUGUCAGACUUAACGU']
srr:       SRX5082454
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082454.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082454.cram scaffold_12:478925-479041

1 out of bounds
19 alignments
19 proper strand
18 stranded perfect matches

************************                                                                     ************************
UGCUACCGUUGUCAGACUUAACGUGAAACGUGCAGGAAUGCAGGUGCGCUAGUAAUAUCAGGCUUCACUCUUGUAUCAUUCUCAGGCCGCCUCAGGUUGAGCCUGAUACAGUAGCCU
.(((((.((.(((((.((((((.(((..((.((..(((((((((.(.(..(((........))).).).))))))).....))..))))..))).)))))).))))))).)))))..
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 c
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=0 c*
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 ma
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=0 ma*

-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCC- l=21 a=1 
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 (c,ma)
--------------------------------------------------------------------------------------------CAGGUUGAGCCUGAUACAGUAGCCU l=25 a=2 
--CUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=21 a=1 
-GCUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=22 a=4 
-GCUACCGUUGUCAGACUUAAaG---------------------------------------------------------------------------------------------- l=22 a=1 

mb-01111
ax-1011111
ku-01
ss-111111111110
fn-111
